rna_quantification_service

Gets a list of ‘ExpressionLevel’ matching the search criteria.

This request maps to the URL GET /rnaquantificationsets/{rna_quantification_set_id}.

************ /rnaquantifications/search ***************

This request maps to the URL GET /rnaquantifications/{rna_quantification_id}.

This request maps to the URL GET /expressionlevels/{expression_level_id}.

SearchRnaQuantifications(request)

Parameters:request – SearchRnaQuantificationsRequest Return type:SearchRnaQuantificationsResponse Throws:GAException

Gets a list of ‘RnaQuantification’ matching the search criteria. ‘POST /rnaquantifications/search’ must accept JSON version of ‘SearchRnaQuantificationsRequest’ as the post body and will return a JSON version of ‘SearchRnaQuantificationResponse’.

GetExpressionLevel(request)

Parameters:request – GetExpressionLevelRequest Return type:ExpressionLevel Throws:GAException

Gets a ExpressionLevel by ID. GET /expressionlevels/{id} will return a JSON version of ExpressionLevel.

GetRnaQuantificationSet(request)

Parameters:request – GetRnaQuantificationSetRequest Return type:RnaQuantificationSet Throws:GAException

Gets a RnaQuantificationSet by ID. GET /rnaquantificationsets/{id} will return a JSON version of RnaQuantificationSet.

SearchRnaQuantificationSets(request)

Parameters:request – SearchRnaQuantificationSetsRequest Return type:SearchRnaQuantificationSetsResponse Throws:GAException

Gets a list of ‘RnaQuantificationSet’ matching the search criteria. ‘POST /rnaquantificationsets/search’ must accept JSON version of ‘SearchRnaQuantificationSetRequest’ as the post body and will return a JSON version of ‘SearchRnaQuantificationSetResponse’.

SearchExpressionLevels(request)

Parameters:request – SearchExpressionLevelsRequest Return type:SearchExpressionLevelsResponse Throws:GAException

‘POST /expressionlevels/search’ must accept JSON version of ‘SearchExpressionLevelsRequest’ as the post body and will return a JSON version of ‘SearchExpressionLevelsResponse’.

GetRnaQuantification(request)

Parameters:request – GetRnaQuantificationRequest Return type:RnaQuantification Throws:GAException

Gets a RnaQuantification by ID. GET /rnaquantifications/{id} will return a JSON version of RnaQuantification.

message SearchRnaQuantificationSetsRequest

Fields:

• dataset_id (string) – The Dataset to search.
• page_size (integer) – Specifies the maximum number of results to return in a single page. If unspecified, a system default will be used.
• page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

This request maps to the body of ‘POST /rnaquantificationsets/search’ as JSON.

message SearchRnaQuantificationSetsResponse

Fields:

• rna_quantification_sets (list of RnaQuantificationSet) – The list of matching quantification sets.
• next_page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

This is the response from ‘POST /rnaquantificationsets/search’ expressed as JSON.

message GetRnaQuantificationSetRequest

Fields:

• rna_quantification_set_id (string) – The ID of the RnaQuantificationSet.

message SearchRnaQuantificationsRequest

Fields:

• rna_quantification_set_id (string) – Return only Rna Quantifications which belong to this set. Must be specified.
• biosample_id (string) – Return only RNA quantifications regarding the specified biosample. Optional.
• page_size (integer) – Specifies the maximum number of results to return in a single page. If unspecified, a system default will be used.
• page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

This request maps to the body of ‘POST /rnaquantifications/search’ as JSON.

message SearchRnaQuantificationsResponse

Fields:

• rna_quantifications (list of RnaQuantification) – The list of matching quantifications.
• next_page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

This is the response from ‘POST /rnaquantifications/search’ expressed as JSON.

message GetRnaQuantificationRequest

Fields:

• rna_quantification_id (string) – The ID of the RnaQuantification.

message SearchExpressionLevelsRequest

Fields:

• rna_quantification_id (string) – The rnaQuantification to restrict search to.
• feature_ids (string) – Only return expressions with any of the specified feature_ids.
• threshold (float) – Only return ExpressionLevel records with expressions exceeding this value. (Defaults to 0.0)
• page_size (integer) – Specifies the maximum number of results to return in a single page. If unspecified, a system default will be used.
• page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

************ /expressionlevels/search *************** This request maps to the body of ‘POST /expressionlevels/search’ as JSON.

message SearchExpressionLevelsResponse

Fields:

• expression_levels (list of ExpressionLevel) – The list of matching quantifications.
• next_page_token (string) – The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of ‘nextPageToken’ from the previous response.

This is the response from ‘POST /expressionlevels/search’ expressed as JSON.

message GetExpressionLevelRequest

Fields:

• expression_level_id (string) – The ID of the ExpressionLevel.